Hi,
I used dcm2niigui to convert a functional scan to nii. The orientation information according to fslhd is as follows (LAS). However, increasing z in fslview goes more INFERIOR (the label says SUPERIOR). Could you please suggest an alternate converter to try or the appropriate fslswapdim/fslorient command to use to fix the orientation?
Many thanks!
Malathi
qform_code 1
qto_xyz:1 -3.000000 0.000000 -0.000000 95.907776
qto_xyz:2 0.000000 2.992692 0.209269 -77.888763
qto_xyz:3 -0.000000 -0.209269 2.992692 -173.475433
qto_xyz:4 0.000000 0.000000 0.000000 1.000000
qform_xorient Right-to-Left
qform_yorient Posterior-to-Anterior
qform_zorient Inferior-to-Superior
sform_name Scanner Anat
sform_code 1
sto_xyz:1 -3.000000 0.000000 0.000000 95.907776
sto_xyz:2 0.000000 2.992692 0.209269 -77.888763
sto_xyz:3 0.000000 -0.209269 2.992692 -173.475433
sto_xyz:4 0.000000 0.000000 0.000000 1.000000
sform_xorient Right-to-Left
sform_yorient Posterior-to-Anterior
sform_zorient Inferior-to-Superior
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