Hi,
Try to edit the file all.bvars and replace all instances of /usr/local/fsl with /usr/share/fsl/5.0
All the best,
Mark
On 4 Mar 2013, at 08:11, Gayane Aghakhanyan <[log in to unmask]> wrote:
> Dear Mark,
>
> As I mentioned before, I've already had fsl-first-data,
> I've tried vertexAnalysis tutorial data following instructions here http://www.fmrib.ox.ac.uk/fslcourse/lectures/practicals/seg_struc/index.html#first
> However, after command below
>
> first_utils --usebvars --vertexAnalysis -i all.bvars \
> -o diff_con1_dis2_L_Hipp_mni -d design_con1_dis2.mat --useReconMNI
>
> I've got the same output in the terminal window:
>
> Warning: does not exist. Attempting to switch to: /usr/share/fsl/5.0
> Not a vtk file (error in line 1).
> Not a vtk file (error in line 1).
>
> It is said In the tutorial - If you are running the above command on a personal install of FSL, it may fail unless FSL is installed at /usr/local/fsl.
> However, as you know perfectly in Debian/Ubuntu, FSL by default is installed at /usr/share/fsl/5.0. I'm not sure whether this could cause problem, couldn't it?
>
> Thanks for your time
> Gayane
>
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