Hello FSL Experts
I am trying to run a TBSS analysis with a ROI
I used the commands:
1) fslmaths $FSLDIR/data/atlases/JHU/JHU-ICBM-tracts-maxprob-thr0-1mm.nii.gz
-thr 16 -uthr 17 mask_unc_bilat
2) fslview $FSLDIR/data/standard/MNI152_T1_1mm mask_unc_bilat
I am looking here for the index numbers
file:///usr/local/fsl/data/atlases/JHU-tracts.xml
but I am still getting the unicinate fasciculus properly only on one
side and on the other just some parts of the external capsule
Can anyone help me understand what I am doing wrong?
Also, I have attached my output
I would be grateful for any help
best wishes
Prerona
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