I'm looking for a way to perform FSL's cluster thresholding from the command line. I'm hoping to do it the same way FEAT does it in post-stats, but I'll be running it on a single NII file that wasn't generated by FEAT. I've looked into the cluster command, but as far as I can tell this only reports statistics about clusters. Is this possible to do, and if so, how is it done? Are there any extra files (i.e., registration transformation matrix, etc) that I'll be needing? Thanks for your help.
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