Dear FSL experts
I'm using FSL 5.0.2 on Ubuntu 12.04.1 LTS 64-bit system.
I successfully run run_first_all, than I've used concat_bvars command as below
concat_bvars CON_to_PAT_L_Caud.bvars CON*_L_Caud_first.bvars PAT*_L_Caud_first.bvars
Next, I run first_utils:
first_utils --vertexAnalysis --usebvars -i CON_to_PAT_L_Caud.bvars -d CON1_PAT2.mat -o shape_analysis/CON1_PAT2_L_Caud --useReconNative --useRigidAlign -v >& shape_analysis/CON1_PAT2_L_Caud_output.txt
which ended up after a minute without error massage. This is what I found in the CON1_PAT2_L_Caud_output.txt file within the shape_analysis directory:
Warning: does not exist. Attempting to switch to: /usr/share/fsl/5.0
read model
Not a vtk file (error in line 1).
Not a vtk file (error in line 1).
Gayane
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