Hi Eugene
I've put the log file below. I ran MELODIC from the fsl GUI. There's an "out of memory" error in the "initialisation" section, but don't know if that's the main problem.
Many thanks
Mahsa
Progress Report / Log
Started at Fri Feb 22 15:23:31 EST 2013
Main script
/bin/cp /tmp/feat_SNZMF5.fsf design.fsf
mkdir .files;cp /usr/share/fsl/5.0/doc/fsl.css .files;ln -s /usr/share/fsl/5.0/doc/images .files/images
/usr/share/fsl/5.0/bin/fsl_sub -T 10 -l logs -N feat1a_init /usr/share/fsl/5.0/bin/feat /home/mshokouh/Desktop/DaronFT_Melodic_FSL/Session2/f4D_reg.ica/design.fsf -D /home/mshokouh/Desktop/DaronFT_Melodic_FSL/Session2/f4D_reg.ica -I 1 -init
23462
/usr/share/fsl/5.0/bin/fsl_sub -T 9 -l logs -N feat2_pre -j 23462 /usr/share/fsl/5.0/bin/feat /home/mshokouh/Desktop/DaronFT_Melodic_FSL/Session2/f4D_reg.ica/design.fsf -D /home/mshokouh/Desktop/DaronFT_Melodic_FSL/Session2/f4D_reg.ica -I 1 -prestats
syntax error in expression "Image + ( 10 * ( Exception - Image ) / 100.0 )": variable references require preceding $
while executing
"if { [ catch {
for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
switch -- [ lindex $argv $argindex ] {
-I {
incr argin..."
(file "/usr/share/fsl/5.0/bin/feat" line 119)
Initialisation
/usr/share/fsl/5.0/bin/fslmaths /home/mshokouh/Desktop/DaronFT_Melodic_FSL/Session2/f4D_reg prefiltered_func_data -odt float
Image Exception : #99 :: Out of memory
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
Aborted (core dumped)
Total original volumes = 0
Error - prefiltered_func_data has a different number of time points to that in FEAT setup
Prestats
/usr/share/fsl/5.0/bin/fslstats prefiltered_func_data -p 2 -p 98
Image Exception : #22 :: ERROR: Could not open image prefiltered_func_data
syntax error in expression "Image + ( 10 * ( Exception - Image ) / 100.0 )": variable references require preceding $
while executing
"if { [ catch {
for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
switch -- [ lindex $argv $argindex ] {
-I {
incr argin..."
(file "/usr/share/fsl/5.0/bin/feat" line 119)
Stats
/usr/share/fsl/5.0/bin/fsl_sub -T 30 -l logs -N feat4_ica /usr/share/fsl/5.0/bin/melodic -i filtered_func_data -o filtered_func_data.ica -v --nobet --bgthreshold=3 --tr=7.0 --report --guireport=../../report.html -d 0 --mmthresh=0.5
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