Dear all,
After thresholding the corrp output of randomise (grot), I would like to run tbss_deproject. However, I receive the following output after running tbss_deproject grot 1 (irrespecitive of whether I use the -n option or not):
de-projecting <skeleton-space-image> into all_FA (nonlinearly aligned) subject space
output from stage 1 deprojection will be grot_to_all_FA
Error: failed to open file grot_tmp_deprojected.nii.gz
Image Exception : #22 :: ERROR: Could not open image grot_tmp_deprojected
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
/software/system/fsl/fsl-5.0.2/bin/tbss_deproject: line 94: 26460 Aborted $FSLDIR/bin/tbss_skeleton -i mean_FA -p `cat thresh.txt` mean_FA_skeleton_mask_dst $FSLDIR/data/standard/LowerCingulum_1mm all_FA ${IN}_tmp -D $IN
de-projection done
I would be very grateful if you could let me know what the problem is or how to go around it. I apologise if I might have missed a similar thread on the list.
Thank you and all the best,
Rok
|