I believe so. This was the first question I asked myself when I got the error message. To verify that I was using the most recent version of FSL, I deleted my old FSL, downloaded the most recent version, and performed a full install of the software. I then went to the website and downloaded/installed the most recent patch - fsl-centos5_64-patch-5.0.2.1_from_5.0.1.tar.gz. I verified that when I call FSL, this is the directory that's used with the "which fsl" command. The license files, etc, say I have FSL 4.1. Do you know what else I can do to check that I'm using the correct software?
Stefano Marenco, MD
NIMH/CBDB
10 Center Drive, Bldg 10 room 3C103
Bethesda MD 20892
Tel 301 435-8964
Fax 301 480-7795
Email: [log in to unmask]
-----Original Message-----
From: Jesper Andersson [mailto:[log in to unmask]]
Sent: Wednesday, February 13, 2013 3:40 AM
To: [log in to unmask]
Subject: Re: [FSL] eddy crash: NEWMAT::IndexException
Hi Stefano,
> I tried running eddy in the latest FSL version with this command line:
>
> eddy --imain=allRawData.nii.gz --mask=nodif_brain_mask.nii --acqp=my_acq_param_allData.txt --index=allData_index.txt --bvecs=bvecs_allData --bvals=bvals_allData --topup=my_topup_results --out=eddy_wTopup_out
>
> and got this error message.
>
> terminate called after throwing an instance of 'NEWMAT::IndexException'
> Abort
>
> I was able to use all these same files to run eddy and then applytopup consecutively. So, I think the files are fine.
can you please let me know which version you are running? This sounds like a problem that we had for the first release of eddy, but which has since been fixed.
Jesper
|