Hi Stam,
I'm sorry, I should have mentioned that I didn't use the default settings and that I correctly specified the b0 volume. eddy_correct did noticeably reduce the gradient coil induced distortions in my images; however, it also caused the images to become blurrier. Would this affect the functionality of bedpostx specifically for HARDI data? If so, would you suggest an alternative approach such as the newly released eddy and topup commands?
Thank you,
Brian
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