Hi David,
Would the following make sense?
bet my_structural my_betted_structural
fnirt -ref my_betted_structural -refmask MNI152_T1_2mm.nii -in
data/sub1/run1/filtered_func_data.nii.gz -dof 12
Do you have a recommendation on how to best output the data so that it
can be run in melodic?
Thank you,
Stephanie
On Mon, Feb 11, 2013 at 12:18 AM, David V. Smith
<[log in to unmask]> wrote:
> Not quite. You'll first want to normalize each input (e.g.,
> /data/sub1/run1/filtered_func_data.ica/filtered_func_data.nii.gz) with FLIRT
> or FNIRT. Then you'll make a list of the resulting files.
>
> David
>
>
>
>
>
> On Feb 10, 2013, at 11:20 PM, Stephanie wrote:
>
> I'm trying to run the following cmd on ICA data (already run through
> Feat) to concatenate multiple runs across multiple subjects.
> melodic -i list_of_funcs.txt -o output.ica -v --nobet --tr=2 --report
> --guireport=./report.html -d 25 --mmthresh=0.5 --Ostats -a concat
>
> My question is on the list_of_funcs.txt. I understand that I should
> list all the input files in an ascii text file (one input per line).
> So would the following format make sense?
> sub1/run1/filtered_func_data.ica
> sub1/run2/filtered_func_data.ica
> sub2/run1/filtered_func_data.ica
> sub2/run2/filtered_func_data.ica
>
>
> --------------------------------------------
> David V. Smith, Ph.D.
> Postdoctoral Fellow, Delgado Lab
> Department of Psychology
> Rutgers University
> Newark, NJ 07102
> --------------------------------------------
>
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