Dear experts,
I'm trying to run fslvbm_2_template on a computing cluster as m pc runs out of memory. However, the analysis stops very quickly giving the following error report from FSL (fslvbm2a.e10287942):
### error: can't open batch file 'fslvbm2a.UeMsA'
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
with errorcode 2.
NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------
--------------------------------------------------------------------------
mpirun has exited due to process rank 0 with PID 13447 on
node r3i2n11 exiting without calling "finalize". This may
have caused other processes in the application to be
terminated by signals sent by mpirun (as reported here).
--------------------------------------------------------------------------
There is also an error report from the cluster saying:
usage: qsub [-a date_time] [-A account_string] [-b secs]
[-c { c[=<INTERVAL>] | s | n }] [-C directive_prefix] [-d path] [-D path]
[-e path] [-h] [-I] [-j oe] [-k {oe}] [-l resource_list] [-m n|{abe}]
[-M user_list] [-N jobname] [-o path] [-p priority] [-q queue] [-r y|n]
[-S path] [-t number_to_submit] [-T type] [-u user_list] [-X]
[-W otherattributes=value...] [-v variable_list] [-V ] [-z] [script]
usage: qsub [-a date_time] [-A account_string] [-b secs]
[-c { c[=<INTERVAL>] | s | n }] [-C directive_prefix] [-d path] [-D path]
[-e path] [-h] [-I] [-j oe] [-k {oe}] [-l resource_list] [-m n|{abe}]
[-M user_list] [-N jobname] [-o path] [-p priority] [-q queue] [-r y|n]
[-S path] [-t number_to_submit] [-T type] [-u user_list] [-X]
[-W otherattributes=value...] [-v variable_list] [-V ] [-z] [script]
usage: qsub [-a date_time] [-A account_string] [-b secs]
[-c { c[=<INTERVAL>] | s | n }] [-C directive_prefix] [-d path] [-D path]
[-e path] [-h] [-I] [-j oe] [-k {oe}] [-l resource_list] [-m n|{abe}]
[-M user_list] [-N jobname] [-o path] [-p priority] [-q queue] [-r y|n]
[-S path] [-t number_to_submit] [-T type] [-u user_list] [-X]
[-W otherattributes=value...] [-v variable_list] [-V ] [-z] [script]
usage: qsub [-a date_time] [-A account_string] [-b secs]
[-c { c[=<INTERVAL>] | s | n }] [-C directive_prefix] [-d path] [-D path]
[-e path] [-h] [-I] [-j oe] [-k {oe}] [-l resource_list] [-m n|{abe}]
[-M user_list] [-N jobname] [-o path] [-p priority] [-q queue] [-r y|n]
[-S path] [-t number_to_submit] [-T type] [-u user_list] [-X]
[-W otherattributes=value...] [-v variable_list] [-V ] [-z] [script]
usage: qsub [-a date_time] [-A account_string] [-b secs]
[-c { c[=<INTERVAL>] | s | n }] [-C directive_prefix] [-d path] [-D path]
[-e path] [-h] [-I] [-j oe] [-k {oe}] [-l resource_list] [-m n|{abe}]
[-M user_list] [-N jobname] [-o path] [-p priority] [-q queue] [-r y|n]
[-S path] [-t number_to_submit] [-T type] [-u user_list] [-X]
[-W otherattributes=value...] [-v variable_list] [-V ] [-z] [script]
Does anyone have a clue where this goes wrong?
Many thanks!
Best wishes,
Peter
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