Hi Stefano,
It's difficult to say what went wrong from your rescription. Are you running bedpostx within Freesurfer (i.e. through tracula)? Or simply call it from the command line? Given that you have used bedpostx before, I am assuming you have excluded the obvious candidates (bvals/bvecs, data, mask, etc)?
Cheers
Stam
On 14 Feb 2013, at 16:11, Stefano wrote:
> Hi list,
>
> I am a FSL user from some years and I regulary have used bedpostx tool in previous version.
> Now I'm running some FSL tools in Freesurfer analysis on my new pc (iMAC Mountain Lion). I have done a lot of proof but, when I run bedpostx in FS or FSL seem that it don't fished its work because in .bedpostx folder I have:
>
> bvals
> bvecs
> commands.txt
> diff_slices
> => data_slice_0002
> => dyads1.nii.gz
> => f1samples.nii.gz
> => logfile
> => mean_dsamples.nii.gz
> => mean_f1samples.nii.gz
> => mean_S0samples.nii.gz
> => ph1samples.nii.gz
> => th1samples.nii.gz
> logs that contains:
> bedpostx_post.e27123
> bedpostx_post.o27123
> bedpostx_pre.e6776
> bedpostx_pre.o6776
> bedpostx.e12817.1
> bedpostx.e12817.2
> bedpostx.e12817.3
> bedpostx.e12817.4
> bedpostx.e12817.5
> bedpostx.e12817.6
> bedpostx.e12817.7
> bedpostx.e12817.8
> bedpostx.e12817.9
> bedpostx.e12817.10
> bedpostx.e12817.11
> bedpostx.e12817.12
> bedpostx.e12817.13
> bedpostx.e12817.14
> bedpostx.e12817.15
> bedpostx.e12817.16
> bedpostx.e12817.17
> bedpostx.e12817.18
> bedpostx.e12817.19
> bedpostx.e12817.20
> bedpostx.e12817.21
> bedpostx.e12817.22
> bedpostx.e12817.23
> bedpostx.e12817.24
> bedpostx.e12817.25
> bedpostx.e12817.26
> bedpostx.e12817.27
> bedpostx.e12817.28
> bedpostx.e12817.29
> bedpostx.e12817.30
> bedpostx.e12817.31
> bedpostx.e12817.32
> bedpostx.e12817.33
> bedpostx.e12817.34
> bedpostx.e12817.35
> bedpostx.e12817.36
> bedpostx.e12817.37
> bedpostx.e12817.38
> bedpostx.e12817.39
> bedpostx.e12817.40
> bedpostx.e12817.41
> bedpostx.e12817.42
> bedpostx.e12817.43
> bedpostx.e12817.44
> bedpostx.e12817.45
> bedpostx.e12817.46
> bedpostx.e12817.47
> bedpostx.e12817.48
> bedpostx.e12817.49
> bedpostx.e12817.50
> bedpostx.e12817.51
> bedpostx.e12817.52
> bedpostx.e12817.53
> bedpostx.e12817.54
> bedpostx.e12817.55
> bedpostx.e12817.56
> bedpostx.e12817.57
> bedpostx.e12817.58
> bedpostx.e12817.59
> bedpostx.e12817.60
> bedpostx.o12817.1
> bedpostx.o12817.2
> bedpostx.o12817.3
> bedpostx.o12817.4
> bedpostx.o12817.5
> bedpostx.o12817.6
> bedpostx.o12817.7
> bedpostx.o12817.8
> bedpostx.o12817.9
> bedpostx.o12817.10
> bedpostx.o12817.11
> bedpostx.o12817.12
> bedpostx.o12817.13
> bedpostx.o12817.14
> bedpostx.o12817.15
> bedpostx.o12817.16
> bedpostx.o12817.17
> bedpostx.o12817.18
> bedpostx.o12817.19
> bedpostx.o12817.20
> bedpostx.o12817.21
> bedpostx.o12817.22
> bedpostx.o12817.23
> bedpostx.o12817.24
> bedpostx.o12817.25
> bedpostx.o12817.26
> bedpostx.o12817.27
> bedpostx.o12817.28
> bedpostx.o12817.29
> bedpostx.o12817.30
> bedpostx.o12817.31
> bedpostx.o12817.32
> bedpostx.o12817.33
> bedpostx.o12817.34
> bedpostx.o12817.35
> bedpostx.o12817.36
> bedpostx.o12817.37
> bedpostx.o12817.38
> bedpostx.o12817.39
> bedpostx.o12817.40
> bedpostx.o12817.41
> bedpostx.o12817.42
> bedpostx.o12817.43
> bedpostx.o12817.44
> bedpostx.o12817.45
> bedpostx.o12817.46
> bedpostx.o12817.47
> bedpostx.o12817.48
> bedpostx.o12817.49
> bedpostx.o12817.50
> bedpostx.o12817.51
> bedpostx.o12817.52
> bedpostx.o12817.53
> bedpostx.o12817.54
> bedpostx.o12817.55
> bedpostx.o12817.56
> bedpostx.o12817.57
> bedpostx.o12817.58
> bedpostx.o12817.59
> bedpostx.o12817.60
> log0002
> pid_6714
>
> monitor
> nodif_brain_mask.nii.gz
> xfms
>
> Could you help me, please?
> Many thanks,
>
> Stefano
>
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