Dear FSL experts,
Can you please advise me on how to deal with slice drop outs when using eddy? I'm not using a blip-up blip-down sequence but my diffusion encoding directions span the entire sphere. I have found that compared to eddy_correct, eddy works much better for my data - no "tremor" at all (side note, Jesper have you thought about naming it "steddy"?).
I saw in a previous post that in the future eddy may be able to perform the QC but will that be for blip-up blip-down sequences only?
In the meantime, should I exclude the volumes with the slice drop out and amend the bvecs, bvals, index and acqp files accordingly?
Kind regards,
Meghan
|