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Hello Xavier,
if you look at the downloaded file, you'll notice the source of the
error: The pdbe download link has changed, i.e. this is not a
PDB-file. You'll have to download the PDB file manually until it is
fixed in the latest coot-code.
Cheers,
Tim
On 02/06/2013 01:37 PM, "F.Xavier Gomis-Rüth" wrote:
> Dear CCP4ers,
>
> We managed to install COOT version 0.7 on a MacBookPro Retina with
> Mountain Lion and there seems to be an issue that did not appear
> with the Linux version when trying to retrieve coordinates directly
> from the PDB by givin the code:
>
> (get-ebi-pdb "4aw6") DEBUG:: in get-url-str: "4aw6"
> "http://www.ebi.ac.uk/msd-srv/oca/oca-bin/save-pdb?id=4AW6" pdb
> (handle-read-draw-molecule-with-recentre "coot-download/4aw6.pdb"
> 1) Reading coordinate file: coot-download/4aw6.pdb There was an
> error reading coot-download/4aw6.pdb. ERROR 20 READ: Attempt to
> read unknown-type file. No Spacegroup found for this PDB file Cell:
> 1 1 1 90 90 90 There was a coordinates read error
>
> Any hints on how to circumvent this? Best wishes, Xavier
>
> --
- --
- --
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
GPG Key ID = A46BEE1A
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