Pieter,
I would expect that they are all looking into the wrong direction :) but
I suggest using spm to check that. If you first call up one of the
templates coming with spm, and then your image, they should look similar
with regard to their overall orientation. If not so, you can use the
pitch, roll, yaw fields to enter multiples (or halves) of pi to reorient
your image. Once you're happy with the result, you can apply the
transformation to all your images, using "reorient images". This changes
the header, so you may want to make sure you have backups first.
Cheers,
Marko
Pieter Vandemaele wrote:
> Dear SPM'ers,
>
> I used the Segment module to segment and normalize anatomical scans and
> got strange results, see attachments.
> Is this due to the origin localisation?
> What is the easiest way to deal with this? I have 80 subjects so a
> (semi)automatic solution would be ideal.
>
> Best
>
> Pieter
--
____________________________________________________
PD Dr. med. Marko Wilke
Facharzt für Kinder- und Jugendmedizin
Leiter, Experimentelle Pädiatrische Neurobildgebung
Universitäts-Kinderklinik
Abt. III (Neuropädiatrie)
Marko Wilke, MD, PhD
Pediatrician
Head, Experimental Pediatric Neuroimaging
University Children's Hospital
Dept. III (Pediatric Neurology)
Hoppe-Seyler-Str. 1
D - 72076 Tübingen, Germany
Tel. +49 7071 29-83416
Fax +49 7071 29-5473
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http://www.medizin.uni-tuebingen.de/kinder/epn/
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