Hi - In your case, seedref should be in freesurfer space (which should also be your target/seed space)
Saad
On 1 Jan 2013, at 20:04, Monica Giraldo wrote:
> sorry, --seedref is nodif_brain or the freesurfer brain? Because normally the reference is in the target space, but in the tutorial it says --seedref is the brain that is in freesurfer space, so I don't know if that's and error in the tutorial.
>
> Thanks,
>
--
Saad Jbabdi
University of Oxford, FMRIB Centre
JR Hospital, Headington, OX3 9DU, UK
(+44)1865-222466 (fax 717)
www.fmrib.ox.ac.uk/~saad
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