Hello Sinead,
What do you get if you add the -Q --debug options to your call? I would also check your design_...con file carefully as it looks like randomise is just exiting due to not having anything to do!
Kind Regards
Matthew
> Dear Members,
>
> I am having a problem with Randomise for one of my TBSS datasets. The permutations don't execute (I have specified 5000 permutations in my script) and I get the following output:
>
> randomise options: -i all_FA_skeletonised -o tbss -m mean_FA_skeleton_mask -d design_two_group.mat -t design_two_group.con -n 5000 -x --T2 -V
>
> Loading Data:
> Data loaded
> Finished, exiting
>
>
> The script completes before any permutations are conducted. This problem only occurs with this particular dataset. I have tried re-running TBSS from the beginning as I thought that perhaps a mistake could have been made in previous steps but this error persists.
>
> I am sure that my script is correct and all the appropriate files (all_FA_skeletonised; mean_FA_skeleton_mask; design.con and design.mat) for randomise have been created so I'm not sure what might be causing the problem. If anyone may be able to shed some light on this issue I would really appreciate it.
>
> Thank you for your help!
>
> Sinead
>
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