Dear Stefano,
Try running concat_bvars again and then running first_utils.
I have seen similar problems to this when the bvars file was not created recently (and referred to files that had been moved, or the version of FSL had changed in between).
If that doesn't fix the problem, let us know.
All the best,
Mark
On 21 Jan 2013, at 18:24, StefanoDP <[log in to unmask]>
wrote:
> Hi list,
>
> I installed the new version 5.0. Now, when I run Vertex Analysis (step: first_utils --vertexAnalysis --usebvars -i con_to_dis_L_Hipp.bvars -d con1_dis2.mat -o shape_analysis/con1_dis2_L_Hipp --useReconNative --useRigidAlign -v >& shape_analysis/con1_dis2_L_Hipp_output.txt), in the shape_analysis folder I find:
>
> "Warning: does not exist. Attempting to switch to: /usr/share/fsl/5.0
> read model
> Not a vtk file (error in line 1).
> Not a vtk file (error in line 1)."
>
> This error depends from the installation of new version?
>
> Thanks in advance,
>
> Stefano
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