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The formatting of icedove probably created confusion, but these error
message come from running labelit.png WITH the file DX-CORRECTIONS.cbf
as one and only command line option and no output is created. adxv has
not problem dealing with XDS cbf-files.
Tim
On 01/11/2013 06:43 PM, Nat Echols wrote:
> I think the help message refers to another program. Anyway, it's
> an extremely simple script - having examined the code, the
> command-line invocation is:
>
> labelit.png input_file [output_file]
>
> and that's it - no other options available. But Nick or I will fix
> it so it prints something more useful if run without arguments.
>
> -Nat
>
> On Fri, Jan 11, 2013 at 9:33 AM, Frank von Delft
> <[log in to unmask]> wrote:
>> I got that error blurb too when I run without an image on the
>> commandline. Not very elegant.
>>
>> Try: labelit.png --help
>>
>>
>>
>>
>> On 11/01/2013 16:34, Tim Gruene wrote:
>>>
> Hi Nat!
>
> How recent is recent? From today's 'phenix-online.org': "New Phenix
> version 1.8.1 now available", but
>
> tg@slartibartfast:~/uni/datasets/nk/xds_run3$
> labelit.png_1.8.1-1168 DX-CORRECTIONS.cbf Traceback (most recent
> call last): File
>
> "/xtal/Suites/Phenix/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/../../labelit/command_line/png.py",
>
>
line 27, in <module>
> OV = overlay_plain(infile,graphics_bin) File
>
> "/xtal/Suites/Phenix/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/../../labelit/command_line/png.py",
>
>
line 6, in __init__
> OverlayDriverClass.__init__(self,infile,graphics_bin) File
>
> "/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/overlay_distl.py",
>
>
line 19, in __init__
> self.I = GenericImageWorker(infile,binning=graphics_bin) File
> "/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/graphics/support.py",
>
>
line 12, in __init__
> images = ImageFiles(imagenames,labelit_commands) File
>
> "/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/imagefiles.py",
>
>
line 184, in __init__
> self.filenames = FileNames(arg_module,phil_params) File
>
> "/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/imagefiles.py",
>
>
line 70, in __init__
> self.interface3_parse_command() File
>
> "/xtal/Suites/Phenix/phenix-1.8.1-1168/cctbx_project/spotfinder/diffraction/imagefiles.py",
>
>
line 138, in interface3_parse_command
>
> self.interface3_FN_factory(os.path.abspath(file),error_message="File
>
>
name not accepted")
> File
>
> "/xtal/Suites/Phenix/phenix-1.8.1-1168/cctbx_project/spotfinder/diffraction/imagefiles.py",
>
>
line 127, in interface3_FN_factory
> raise Exception("Input error: "+error_message) Exception: Input
> error: File name not accepted
>
> Compared to: tg@slartibartfast:~/uni/datasets/nk/xds_run3$ adxv
> -sa DX-CORRECTIONS.cbf DX-CORRECTIONS.tiff Adxv Version 1.9.8
> Copyright (C) 1994-2011 by Andrew Arvai, Area Detector Systems
> Corporation Recognized CBF format data. Warning: Could not find
> diffrn_frame_data or diffrn_data_frame
> tg@slartibartfast:~/uni/datasets/nk/xds_run3$ identify
> DX-CORRECTIONS.tiff DX-CORRECTIONS.tiff TIFF 768x768 768x768+0+0
> 8-bit PseudoClass 256c 592KB 0.000u 0:00.000
>
> Cheers, Tim
>
> On 01/10/2013 09:59 PM, Frank von Delft wrote:
>>>>>
>>>>> Brilliant - thanks Nat!! Easy to work around that
>>>>> feature.
>>>>>
>>>>> And thanks Nick!!
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> -------- Original Message -------- Subject: Re:
>>>>> [ccp4bb] Convert cbf to png/tiff? Date: Thu, 10 Jan
>>>>> 2013 12:47:21 -0800 From: Nat Echols
>>>>> <[log in to unmask]> To: Frank von Delft
>>>>> <[log in to unmask]>
>
>
>
>
>
>
>>>>>
>>>>>
>>>>> Using any recent Phenix distribution:
>>>>>
>>>>> labelit.png file_name
>>>>>
>>>>> For reasons unknown to me, the output is named "plain.png"
>>>>> - I will bug Nick about this.
>>>>>
>>>>> On Thu, Jan 10, 2013 at 12:36 PM, Frank von Delft
>>>>> <[log in to unmask]> wrote:
>>>>>>
>>>>>> Hello all - anybody know an easy way to convert CBF
>>>>>> images (Pilatus) into something lossless like tiff or
>>>>>> png?
>>>>>>
>>>>>> Ideally *easy* as in r e a l l y e a s y and not
>>>>>> requiring extensive installation of dependencies and
>>>>>> stuff. Because then I might as well write my own stuff
>>>>>> using cbflib and PIL in python.
>>>>>>
>>>>>> Thanks! phx
>>>>>
>>>>>
>>>>>
>>>>>
> -- - -- Dr Tim Gruene Institut fuer anorganische Chemie Tammannstr.
> 4 D-37077 Goettingen
>
> GPG Key ID = A46BEE1A
>
>
- --
- --
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
GPG Key ID = A46BEE1A
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