I think the help message refers to another program. Anyway, it's an
extremely simple script - having examined the code, the command-line
invocation is:
labelit.png input_file [output_file]
and that's it - no other options available. But Nick or I will fix it
so it prints something more useful if run without arguments.
-Nat
On Fri, Jan 11, 2013 at 9:33 AM, Frank von Delft
<[log in to unmask]> wrote:
> I got that error blurb too when I run without an image on the commandline.
> Not very elegant.
>
> Try:
> labelit.png --help
>
>
>
>
> On 11/01/2013 16:34, Tim Gruene wrote:
>>
>> -----BEGIN PGP SIGNED MESSAGE-----
>> Hash: SHA1
>>
>> Hi Nat!
>>
>> How recent is recent? From today's 'phenix-online.org':
>> "New Phenix version 1.8.1 now available", but
>>
>> tg@slartibartfast:~/uni/datasets/nk/xds_run3$ labelit.png_1.8.1-1168
>> DX-CORRECTIONS.cbf
>> Traceback (most recent call last):
>> File
>>
>> "/xtal/Suites/Phenix/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/../../labelit/command_line/png.py",
>> line 27, in <module>
>> OV = overlay_plain(infile,graphics_bin)
>> File
>>
>> "/xtal/Suites/Phenix/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/../../labelit/command_line/png.py",
>> line 6, in __init__
>> OverlayDriverClass.__init__(self,infile,graphics_bin)
>> File
>>
>> "/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/overlay_distl.py",
>> line 19, in __init__
>> self.I = GenericImageWorker(infile,binning=graphics_bin)
>> File
>> "/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/graphics/support.py",
>> line 12, in __init__
>> images = ImageFiles(imagenames,labelit_commands)
>> File
>>
>> "/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/imagefiles.py",
>> line 184, in __init__
>> self.filenames = FileNames(arg_module,phil_params)
>> File
>>
>> "/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/imagefiles.py",
>> line 70, in __init__
>> self.interface3_parse_command()
>> File
>>
>> "/xtal/Suites/Phenix/phenix-1.8.1-1168/cctbx_project/spotfinder/diffraction/imagefiles.py",
>> line 138, in interface3_parse_command
>>
>> self.interface3_FN_factory(os.path.abspath(file),error_message="File
>> name not accepted")
>> File
>>
>> "/xtal/Suites/Phenix/phenix-1.8.1-1168/cctbx_project/spotfinder/diffraction/imagefiles.py",
>> line 127, in interface3_FN_factory
>> raise Exception("Input error: "+error_message)
>> Exception: Input error: File name not accepted
>>
>> Compared to:
>> tg@slartibartfast:~/uni/datasets/nk/xds_run3$ adxv -sa
>> DX-CORRECTIONS.cbf DX-CORRECTIONS.tiff
>> Adxv Version 1.9.8
>> Copyright (C) 1994-2011 by Andrew Arvai, Area Detector Systems Corporation
>> Recognized CBF format data.
>> Warning: Could not find diffrn_frame_data or diffrn_data_frame
>> tg@slartibartfast:~/uni/datasets/nk/xds_run3$ identify
>> DX-CORRECTIONS.tiff
>> DX-CORRECTIONS.tiff TIFF 768x768 768x768+0+0 8-bit PseudoClass 256c
>> 592KB 0.000u 0:00.000
>>
>> Cheers,
>> Tim
>>
>> On 01/10/2013 09:59 PM, Frank von Delft wrote:
>>>
>>> Brilliant - thanks Nat!! Easy to work around that feature.
>>>
>>> And thanks Nick!!
>>>
>>>
>>>
>>>
>>> -------- Original Message -------- Subject: Re: [ccp4bb]
>>> Convert cbf to png/tiff? Date: Thu, 10 Jan 2013 12:47:21 -0800
>>> From: Nat Echols <[log in to unmask]> To: Frank von
>>> Delft <[log in to unmask]>
>>
>>
>>
>>
>>
>>
>>>
>>>
>>> Using any recent Phenix distribution:
>>>
>>> labelit.png file_name
>>>
>>> For reasons unknown to me, the output is named "plain.png" - I
>>> will bug Nick about this.
>>>
>>> On Thu, Jan 10, 2013 at 12:36 PM, Frank von Delft
>>> <[log in to unmask]> wrote:
>>>>
>>>> Hello all - anybody know an easy way to convert CBF images
>>>> (Pilatus) into something lossless like tiff or png?
>>>>
>>>> Ideally *easy* as in r e a l l y e a s y and not requiring
>>>> extensive installation of dependencies and stuff. Because then I
>>>> might as well write my own stuff using cbflib and PIL in python.
>>>>
>>>> Thanks! phx
>>>
>>>
>>>
>>>
>> - -- - --
>> Dr Tim Gruene
>> Institut fuer anorganische Chemie
>> Tammannstr. 4
>> D-37077 Goettingen
>>
>> GPG Key ID = A46BEE1A
>>
>> -----BEGIN PGP SIGNATURE-----
>> Version: GnuPG v1.4.12 (GNU/Linux)
>> Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/
>>
>> iD8DBQFQ8D8kUxlJ7aRr7hoRAkcsAJ9Z4JmZ3zAvFYDRMaGbzunMYTjLNACfQWBP
>> s3YM17LqF9zvCsAK8ezG8xQ=
>> =hXlq
>> -----END PGP SIGNATURE-----
|