Hi,
If you want stats, or any image, viewed on the T1W image then it will need to be transformed into that space in the same way that you did with the melodic_IC. FSLView requires that all images are in the same space before viewing.
All the best,
Mark
On 27 Jan 2013, at 00:05, Varina Wolf <[log in to unmask]> wrote:
> Hello, yes thank you for the tip about the reg folder. I followed the instructions in the FSL manual regarding registering the stat imaged to the standard using the commands:
>
> flirt -in melodic_IC -ref ../T1W_brain.nii.gz -out melodic_IC_hr -applyxfm -init /mnt/reg/example_func2standard.mat
>
> and then tried to view them with:
>
> fslview /mnt/T1W.nii.gz melodic_IC_hr.nii.gz
>
> Do this change the registration of the thresh_zstat images? Or is it somehow all of the thresh_zstat images totaled into the medolic_IC_hr file now? Fslview does not show any one of the thresholded zstat images with this command that I can tell, but does recognize the file as an image file that has the same dimensions at T1W_brain. It's just not clear to me.
>
> Thanks in advance
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