Dear Joe,
The workaround is only required for data stored in a native complex nifti format. Scanner data from Siemens scanners (which is what fsl_prepare_fieldmap is designed to work with) is normally saved as separate magnitude and phase images and therefore does not require any workarounds.
All the best,
Mark
On 3 Jan 2013, at 16:18, Joseph Orr <[log in to unmask]>
wrote:
> Hi, I just wanted to confirm that the workaround you suggest would also be required for fsl_prepare_fieldmap, since this script appears to call fugue.
>
> Thanks,
> Joe
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