Also turning "Interactive dots" on in coot could help. It overrides any
other molprobity dots when you run real space refinement, choosing
different rotamer or editing chi-angels for example.
Cheers,
Jan
On 01/30/2013 09:34 PM, Nathaniel Clark wrote:
> I get the same result when I select Draw->generic display
> objects-nothing at all happens (not even a window hidden behind the
> main coot window).
>
> I think I stumbled on the solution though, if I go to the molprobity
> tab in Phenix, I can toggle the dots on or off in coot!
> Nat
> I guess I will have to just close out the Phenix-initiated coot window
> and start a fresh one.
>
> On Tue, Jan 29, 2013 at 3:19 PM, Nat Echols <[log in to unmask]> wrote:
>> On Tue, Jan 29, 2013 at 12:33 PM, Nathaniel Clark
>> <[log in to unmask]> wrote:
>>> When I use a coot window that was started by Phenix, it shows those
>>> 'molprobity' dots which represent the Van Der Waals surface. Can
>>> anyone tell me how to turn those off?
>> In theory, Draw menu --> Generic Display Objects... has the toggles
>> for these, although for some strange reason it does nothing on the
>> version I have installed here, which I believe came from the CCP4 home
>> page. (Nor does opening the Python scripting console and typing
>> "generic_objects_gui()".)
>>
>> I will add an option to Phenix to disable the automatic display, in any case.
>>
>> - the other Nat
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