There is another issue as well I've faced. When I tried to this for converting MNI map to individual space.
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flirt -in ${Input1} -ref ${refVol} -applyxfm -init ${standard2example_func} -out ${OutputDIR}/convt_BIN_${location}_${region}_HarOx.nii.gz
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With previous version (V.4) this flirt command was okay but it returned blank mask with current version.
I would appreciate any feedback!
Thanks
Tae-Ho
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