Dear FSL experts:
I want to get FA_skeleton image of corpus callosum, so I plan to do it using JHU ICBM-label atlas. As far as I know, the patient's FA map is registered to FMRIB58_FA map in TBSS. When I loaded corpus callosum mask of JHU atlas in FMRIB58_FA map, I found the mask was not consistent with the corpus callosum in FMRIB58_FA image. I know this is caused by the different standard template.
I searched on the JISCMail, but did not find a solution. What should I do, just ignore it, or using FLIRT, applyxfm to convert it to FMRIB58_FA space?
Thanks!
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