>
> And another easy answer for Miro: in MRIcron, when you load the AAL atlas,
> click on a region you are interested in. MRIcron then displays the label,
> the index and the MNI coordinate.
>>>> This is exactly what OrthoView does (with a few more bells and whistles)
> Thanks for your insights,
>
> Bas
>
>
>
>
> On 11/14/2012 04:02 AM, Hasan, Khader M wrote:
>>
>> 1. http://www.cyceron.fr/web/aal__anatomical_automatic_labeling.html
>>
>> a. AAL toolbox (SPM99, SPM2, SPM5, SPM8)
>>
>> b. Paper: Automated Anatomical Labeling of Activations in SPM Using a
>> Macroscopic Anatomical Parcellation of the MNI MRI Single-Subject Brain. N.
>> Tzourio-Mazoyer, B. Landeau, D. Papathanassiou, F. Crivello, O. Etard, N.
>> Delcroix, B. Mazoyer, and M. Joliot. NeuroImage 2002. 15 :273-289
>>
>> 2. International Consortium for Brain Mapping (ICBM)
>>
>> http://www.loni.ucla.edu/ICBM/Downloads/Downloads_Atlases.shtml
>>
>> 3. Check templates and files provided with MRIcro and Human Brain
>> Connectome works (AAl.txt --below)
>>
>> 1 Precentral_L 2001
>> 2 Precentral_R 2002
>> 3 Frontal_Sup_L 2101
>> 4 Frontal_Sup_R 2102
>> 5 Frontal_Sup_Orb_L 2111
>> 6 Frontal_Sup_Orb_R 2112
>> 7 Frontal_Mid_L 2201
>> 8 Frontal_Mid_R 2202
>> 9 Frontal_Mid_Orb_L 2211
>> 10 Frontal_Mid_Orb_R 2212
>> 11 Frontal_Inf_Oper_L 2301
>> 12 Frontal_Inf_Oper_R 2302
>> 13 Frontal_Inf_Tri_L 2311
>> 14 Frontal_Inf_Tri_R 2312
>> 15 Frontal_Inf_Orb_L 2321
>> 16 Frontal_Inf_Orb_R 2322
>> 17 Rolandic_Oper_L 2331
>> 18 Rolandic_Oper_R 2332
>> 19 Supp_Motor_Area_L 2401
>> 20 Supp_Motor_Area_R 2402
>> 21 Olfactory_L 2501
>> 22 Olfactory_R 2502
>> 23 Frontal_Sup_Medial_L 2601
>> 24 Frontal_Sup_Medial_R 2602
>> 25 Frontal_Med_Orb_L 2611
>> 26 Frontal_Med_Orb_R 2612
>> 27 Rectus_L 2701
>> 28 Rectus_R 2702
>> 29 Insula_L 3001
>> 30 Insula_R 3002
>> 31 Cingulum_Ant_L 4001
>> 32 Cingulum_Ant_R 4002
>> 33 Cingulum_Mid_L 4011
>> 34 Cingulum_Mid_R 4012
>> 35 Cingulum_Post_L 4021
>> 36 Cingulum_Post_R 4022
>> 37 Hippocampus_L 4101
>> 38 Hippocampus_R 4102
>> 39 ParaHippocampal_L 4111
>> 40 ParaHippocampal_R 4112
>> 41 Amygdala_L 4201
>> 42 Amygdala_R 4202
>> 43 Calcarine_L 5001
>> 44 Calcarine_R 5002
>> 45 Cuneus_L 5011
>> 46 Cuneus_R 5012
>> 47 Lingual_L 5021
>> 48 Lingual_R 5022
>> 49 Occipital_Sup_L 5101
>> 50 Occipital_Sup_R 5102
>> 51 Occipital_Mid_L 5201
>> 52 Occipital_Mid_R 5202
>> 53 Occipital_Inf_L 5301
>> 54 Occipital_Inf_R 5302
>> 55 Fusiform_L 5401
>> 56 Fusiform_R 5402
>> 57 Postcentral_L 6001
>> 58 Postcentral_R 6002
>> 59 Parietal_Sup_L 6101
>> 60 Parietal_Sup_R 6102
>> 61 Parietal_Inf_L 6201
>> 62 Parietal_Inf_R 6202
>> 63 SupraMarginal_L 6211
>> 64 SupraMarginal_R 6212
>> 65 Angular_L 6221
>> 66 Angular_R 6222
>> 67 Precuneus_L 6301
>> 68 Precuneus_R 6302
>> 69 Paracentral_Lobule_L 6401
>> 70 Paracentral_Lobule_R 6402
>> 71 Caudate_L 7001
>> 72 Caudate_R 7002
>> 73 Putamen_L 7011
>> 74 Putamen_R 7012
>> 75 Pallidum_L 7021
>> 76 Pallidum_R 7022
>> 77 Thalamus_L 7101
>> 78 Thalamus_R 7102
>> 79 Heschl_L 8101
>> 80 Heschl_R 8102
>> 81 Temporal_Sup_L 8111
>> 82 Temporal_Sup_R 8112
>> 83 Temporal_Pole_Sup_L 8121
>> 84 Temporal_Pole_Sup_R 8122
>> 85 Temporal_Mid_L 8201
>> 86 Temporal_Mid_R 8202
>> 87 Temporal_Pole_Mid_L 8211
>> 88 Temporal_Pole_Mid_R 8212
>> 89 Temporal_Inf_L 8301
>> 90 Temporal_Inf_R 8302
>> 91 Cerebelum_Crus1_L 9001
>> 92 Cerebelum_Crus1_R 9002
>> 93 Cerebelum_Crus2_L 9011
>> 94 Cerebelum_Crus2_R 9012
>> 95 Cerebelum_3_L 9021
>> 96 Cerebelum_3_R 9022
>> 97 Cerebelum_4_5_L 9031
>> 98 Cerebelum_4_5_R 9032
>> 99 Cerebelum_6_L 9041
>> 100 Cerebelum_6_R 9042
>> 101 Cerebelum_7b_L 9051
>> 102 Cerebelum_7b_R 9052
>> 103 Cerebelum_8_L 9061
>> 104 Cerebelum_8_R 9062
>> 105 Cerebelum_9_L 9071
>> 106 Cerebelum_9_R 9072
>> 107 Cerebelum_10_L 9081
>> 108 Cerebelum_10_R 9082
>> 109 Vermis_1_2 9100
>> 110 Vermis_3 9110
>> 111 Vermis_4_5 9120
>> 112 Vermis_6 9130
>> 113 Vermis_7 9140
>> 114 Vermis_8 9150
>> 115 Vermis_9 9160
>> 116 Vermis_10 9170
>>
>>
>>
>> Khader M Hasan, PhD
>> Associate Professor of Radiology
>> MSE 168, Tel 713 500 7690 (FAX 713 500 7684)
>> University of Texas Health Science Center at Houston
>> Medical School
>> Diagnostic and Interventional Imaging
>> Magnetic Resonance Imaging Research Division
>> Diffusion Tensor Imaging Lab, Tel 713 500 7683
>> http://www.uth.tmc.edu/radiology/faculty/khader-m-hasan/index.html
>> ________________________________________
>> From: SPM (Statistical Parametric Mapping) [[log in to unmask]] On Behalf
>> Of Miro Drahos [[log in to unmask]]
>> Sent: Tuesday, November 13, 2012 7:47 PM
>> To: [log in to unmask]
>> Subject: [SPM] AAL atlas labels
>>
>> Hi,
>> where can I find the labels for the AAL atlas ROIs? A legend that maps
>> the intensity in aal atlas to an anatomical description.
>> Thank you,
>> Miro
>
>
>
> --
> --------------------------------------------------
> Dr. S.F.W. Neggers
> Division of Brain Research
> Rudolf Magnus Institute for Neuroscience
> Utrecht University Medical Center
>
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> : http://www.brainsciencetools.com (CEO)
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