Thanks Monica; that question has been bothering me. I checked out your first link, and clicked through to MIABE. AFAICS this is more of a checklist than a file format; in fact the paper referenced (Orchard, S., Al-Lazikani, B., Bryant, S., Clark, D., Calder, E., Dix, I., Engkvist, O., et al. (2011). Minimum information about a bioactive entity (MIABE). Nature reviews. Drug discovery, 10(9), 661–9. doi:10.1038/nrd3503) described a specific file format that exists for the purpose of holding this kind of information: the HUPO PSI-Molecular Interactions (MI) XML 2.5 interchange format .
So, I may put in a general reference to the MIBBI family at the moment. If anyone knows of specific MIBBI members that do represent file formats, or specific encodings within more general files dedicated for the purpose, please advise. Thanks,
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Chris Rusbridge
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On 6 Nov 2012, at 15:28, Monica Duke wrote:
> Chris I'm not sure if these count as file formats or metadata schemas (maybe scope is discussed in the previous link that you sent) but thought I would flag the MIBBI family
> http://mibbi.sourceforge.net/portal.shtml
> http://mibbi.sourceforge.net/about.shtml
> Monica
>
> On 11/05/2012 11:09 AM, Chris Rusbridge wrote:
>> Last week I wrote to try to get some of you involved in Jason Scott's "Let's solve the file format problem" effort this November. I don't think I had much success, so I'm trying again. Having started this, from my experiences so far pretty much anyone who aims to support research data management could benefit from some involvement. Let me try to explain...
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