Hello Fatemeh,
Can you tar up your 2 feat directories and upload them to:
http://www.fmrib.ox.ac.uk/cgi-bin/upload.cgi
and let me know the 6-digit reference number?
Kind Regards
Matthew
> Dear experts
>
> I loaded a design.fsf file from a previously run analysis in FSL4 that
> contained field map correction and FLIRT registration into FSL 5. I then
> re ran the same first level analysis with FSL 5 and BBR option (not making
> any other changes, for example no changes to B0 unwrapping option),however
> it appears that the field map correction makes the distortions much worse
> when used in FSL 5. (see attached files). I have also attached the
> design.fsf file.
>
> I checked the analysis with a different patient who had less atrophy, but
> the problem persists.
>
> Any advise will be much appreciated and I am happy to send more files
> (there was a limit of 200 K on this email)
>
> Many thanks
> Fatemeh
>
>
>
> Dr Fatemeh Geranmayeh
> Wellcome Trust Clinical Research Fellow
> The Computational, Cognitive and Clinical Neuroimaging Laboratory
> Imperial College London
> Telephone : 020 7594 7994
>
>
>
>>
>
> <field map FSL 4.pdf.zip><design.fsf_FSL5.zip><field map _FSL 5 .pdf.zip>
|