Thanks Steve for this,
Just to make sure I am doing this right. My input will be the result of my functional connectivity analysis, e.g. "thresh_zstat1", my design will be my time course seed ROI "BSC_ROI.txt", and then I want to add a mask to look at the correlation coefficient between my seed ROI and the area within the mask? and of course as you suggested the option --des_norm and --dat_norm and --demean.
so it will look like:
fsl_glm -i thresh_zstat1 -d BSC_ROI.txt -o toto -m mask.nii.gz --des_norm --dat_norm --demean
I guess that the output will be a text file with coefficient correlation.. between my seed ROI and the area included in the mask?
Thanks
J.
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