Dear FSL-group,
I try to run the tbss_non_FA with MD.
I get this message and the all_MD_skeletonised is not there. I get only the all_MD.nii.gz So I cannot run randomise
"merging all upsampled MD images into single 4D image
projecting all_MD onto mean FA skeleton
Image Exception : #5 :: Out of Bounds (time index)
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
/usr/local/fsl/bin/tbss_non_FA: line 104: 23770 Abort trap ${FSLDIR}/bin/tbss_skeleton -i mean_FA -p $thresh mean_FA_skeleton_mask_dst ${FSLDIR}/data/standard/LowerCingulum_1mm all_FA all_${ALTIM}_skeletonised -a all_$ALTIM
now run stats - for example:
randomise -i all_MD_skeletonised -o tbss_MD -m mean_FA_skeleton_mask -d design.mat -t design.con -n 500 --T2 -V
(after generating design.mat and design.con)"
What can be done? I use Tbss version v1.2.
Thank you for your help!
Elif
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