Dear Paul,
Sorry to bother you again.
In the scheme script you provided, it seems that the
"imol-refinement-map" is not set. Is it necessary to add this code:
"(set-imol-refinement-map imol-map)" to the script?
Thanks for your reply.
Best wishes,
Q. Cai
On 11/23/2012 07:32 PM, Paul Emsley wrote:
> On 23/11/12 08:54, Qixu Cai wrote:
>>
>>
>> I have some problems about coot.
>> 1, How to run the "Extensions --> All molecule --> Stepped refine" at
>> "no-graphic" mode of coot?
>
> (let ((imol (read-pdb "coot-download/3rso.pdb"))
> (imol-map (make-and-draw-map "coot-download/r3rso-refmac.mtz"
> "FWT" "PHWT" "" 0 0)))
> (map (lambda (chain) (fit-chain imol chain)) (chain-ids imol)))
>
>
>> 2, Are all of the extensions in coot the scheme/python scripts? If
>> yes, where the script files store at?
>
> All and more, I think. They are in coot-top-dir/share/coot/python
>
>>
>> 2, And is there any option to prevent coot auto-loading ~/.coot file?
>
> No. Why would you want to do that?
>
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