Thanks Jeanette! I did not consider adding the nuisance variables to the design matrix directly. Our flow is to run the nuisance model, extract seed timeseries from mean-corrected residuals, and run level 1 on mean-corrected residuals. So if I did it all in one model, would I just extract seed timeseries from the mcf files and use the mcf files as the 4D input? Is the output of these two procedures the same?
-Tara
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