Hi,
Thanks, Saad.
I recognized that the --omatrix1, 2, or 3 may be used for my purpose.
I could not find the docs describing how to use these options.
Please tell me where I can see them.
Best regards,
Hiroki
(2012/10/01 17:57), Saad Jbabdi wrote:
> Hi
> With probtrackx2, you can do something like that using --omatrix2.
> Each row of the resulting matrix will be equivalent to an fdt_paths from one seed voxel/vertex.
> Please see the doc for how to use --omatrix2.
>
> Cheers
> Saad
>
>
>
> On 1 Oct 2012, at 09:44, Hiroki Kurashige wrote:
>
>> Dear FSLer,
>>
>> I'd like to make the set of fdt_paths files for different seed voxels.
>> So, I simply executed the probtrackx repeatedly as I rewrote the fdt_coordinates file.
>> This way worked correctly.
>> But it was so time-consuming because the same set of merged_xxx_samples files were reloaded in each execution.
>> So, if possible, I want to load the merged_xxx_samples files only once and run the probtrackx repeatedly with different voxel seeds.
>> Are there any good ways?
>>
>> Thanks,
>> Hiroki
>>
>
> --
> Saad Jbabdi
> University of Oxford, FMRIB Centre
>
> JR Hospital, Headington, OX3 9DU, UK
> (+44)1865-222466 (fax 717)
> www.fmrib.ox.ac.uk/~saad
>
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