Thank you very much!
The --omatrix2 completely fits my purpose.
(2012/10/01 21:56), Saad Jbabdi wrote:
> There is a bit of doc here: http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FDT/UserGuide#Options_Tab
>
>
>
> On 1 Oct 2012, at 13:22, Hiroki Kurashige wrote:
>
>> Hi,
>>
>> Thanks, Saad.
>> I recognized that the --omatrix1, 2, or 3 may be used for my purpose.
>>
>> I could not find the docs describing how to use these options.
>> Please tell me where I can see them.
>>
>> Best regards,
>> Hiroki
>>
>> (2012/10/01 17:57), Saad Jbabdi wrote:
>>> Hi
>>> With probtrackx2, you can do something like that using --omatrix2.
>>> Each row of the resulting matrix will be equivalent to an fdt_paths from one seed voxel/vertex.
>>> Please see the doc for how to use --omatrix2.
>>>
>>> Cheers
>>> Saad
>>>
>>>
>>>
>>> On 1 Oct 2012, at 09:44, Hiroki Kurashige wrote:
>>>
>>>> Dear FSLer,
>>>>
>>>> I'd like to make the set of fdt_paths files for different seed voxels.
>>>> So, I simply executed the probtrackx repeatedly as I rewrote the fdt_coordinates file.
>>>> This way worked correctly.
>>>> But it was so time-consuming because the same set of merged_xxx_samples files were reloaded in each execution.
>>>> So, if possible, I want to load the merged_xxx_samples files only once and run the probtrackx repeatedly with different voxel seeds.
>>>> Are there any good ways?
>>>>
>>>> Thanks,
>>>> Hiroki
>>>>
>>>
>>> --
>>> Saad Jbabdi
>>> University of Oxford, FMRIB Centre
>>>
>>> JR Hospital, Headington, OX3 9DU, UK
>>> (+44)1865-222466 (fax 717)
>>> www.fmrib.ox.ac.uk/~saad
>>>
>>
>
> --
> Saad Jbabdi
> University of Oxford, FMRIB Centre
>
> JR Hospital, Headington, OX3 9DU, UK
> (+44)1865-222466 (fax 717)
> www.fmrib.ox.ac.uk/~saad
>
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