You cannot have your cake and eat it too, however both flirt and fnirt can generate affine transformation matrices and warp fields (respectively) without actually resampling your brain. You can invert these transformations and use them, for example, to resample a standard atlas into your subject's native space. Not sure if that was what you were looking for...
On Sunday, October 21, 2012 22:32:10 you wrote:
> Hello,
>
> Is there a tool in FSL to orient the brain into standard space coordinates? Without normalizing the brain, keeping it in native space.
>
> Thank you very much,
>
|