Dear Dan,
Sorry for the delay in getting back to you.
The respiratory data will only be plotted in the case that RVT was requested, as otherwise it does no peak detection for the respiratory trace and consequently does not display the respiratory trace with peaks (since there are no detected peaks). This was not clear in the documentation, so I have added this. Also, it is confusing that the webpage still allows you to select the respiratory trace button. We'll change this webpage selection in the future, but for now just ignore it.
As for example data, I will try and make something available on the website soon.
All the best,
Mark
On 8 Oct 2012, at 18:46, Daniel Nolan <[log in to unmask]> wrote:
> Hello All,
>
> We've begun to investigate PNM in FSL5 to do our physiological noise regression. We're a bit stuck however, as PNM registers our Cardiac column correctly but will not plot the Respiration data. There are however populated text files with what I'm assuming are the peaks that it has identified. The reason I'm writing is two-fold. First, it would be great to see an example, if one exists, of both the input physiological file, as well as a custom silce timing file so that we can pass PNM precisely what it needs. Second, I wanted to reach out to see if not being able to display a graph of the respiratory data was a problem you had encountered previously or if it's simply a matter of setting the correct inputs.
>
> Thanks,
>
> Dan
>
> Research Assistant - Human Connectome Project
> Department of Anatomy and Neurobiology
> Washington University Medical School
>
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