Dear Joseph,
I do not know how to convert AFNI transforms into FSL equivalents, but have you tried the new BBR option in FSL5?
It produces much, much better registrations for EPI to structural than we had in previous FSL versions.
All the best,
Mark
On 12 Sep 2012, at 15:48, Joseph Viviano <[log in to unmask]> wrote:
> Hello,
>
> As align_epi_anat.py returns superior registrations, but 3dAllineate introduces Gibbs ringing while using sinc interpolation, I am curious if there is a straightforward way for me to convert AFNI transformation matricies into something that can be read by FLIRT?
>
> Thank you,
>
> Joseph Viviano
>
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