Thank you for your response!
I got two errors (slices_summary, nets_lda) and have one question about the output from nets_glm.
1. I can not find slices_summary.m.
2. And, I got other error messages in nets_lda
>> [lda_percentages]=nets_lda(netmat1,28)
??? Reference to non-existent field 'GroupNames'.
Error in ==> svmclassify at 90
groupnames = svmStruct.GroupNames;
Error in ==> nets_lda at 61
lda(7,n)=svmclassify(svmstruct,xx')*2-1; % SVM
3. In terms of the output for contrast 1, nothing was survived after correction for multiple comparison (FWE, FDR). But in p_corrected I can find several lower than 0.05 and can see several color boxed in figure. Is the value of p_corrected 1-P, not p value itself?
>> [p_uncorrected,p_corrected]=nets_glm(netmat1,'design.mat','design.con',1);
.....
ans =
contrast 1, best values: uncorrected_p=0.017200 FWE_corrected_p=0.702200.
FDR-correction-threshold=0.000000 (to be applied to uncorrected p-values)
ans =
contrast 2, best values: uncorrected_p=0.000400 FWE_corrected_p=0.005600.
FDR-correction-threshold=0.000400 (to be applied to uncorrected p-values)
>> p_corrected(2,:)
ans =
Columns 1 through 11
0 0.0498 0.3434 0 0 0 0 0.0008 0 0 0
Columns 12 through 22
0 0 0.0498 0 0 0 0 0.0096 0 0.1148 0
|