I decided to upgrade my MacBook Pro to OS X 8.0 (previously 10.6), and update my coot and CCP4 programs at the same time (now seems like a bad idea). I use the precompiled library from the Scott Lab, so I followed the directions on his website. I did the following:
Installed new X11 (from Xquartz)
Installed "Command Line Tools (OS X Mountain Lion) for Xcode - August 2012"
curl -O http://psbmini.ucsc.edu/~wgscott/downloads/fink_for_10.8_64bit_base_install_aptsources_sw.tgz
sudo mv fink_for_10.8_64bit_base_install_aptsources_sw.tgz /.
sudo tar xvfz fink_for_10.8_64bit_base_install_aptsources_sw.tgz
source /sw/bin/init.sh
fink selfupdate
fink scanpackages
sudo apt-get update
sudo apt-get dist-upgrade
sudo apt-get install coot ccp4
But now Fink is in the /sw directory instead of the /sw64 directory, and the programs like coot seem to only be in the /sw64/bin directory. If I try to run coot after sourcing /sw/bin/init.sh it cannot find coot (because it isn't there), and if I source /sw64/bin/init.sh it runs the older version of coot. What am I do wrong? Should the programs be in /sw or /sw64? Should I delete old /sw64 directory?
BTW I got an error message during the installation that "Err http://psbmini.ucsc.edu stable/main gcc46-shlibs 4.6.3-1000 404 Not Found"
Sorry for the dumb question.
Bill
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