--
Dave Flitney
IT Manager, FMRIB Centre
On 27 Sep 2012, at 23:36, Mark Tseng <[log in to unmask]> wrote:
> Hi,
>
> I am now under the directory /a040, where there are output of FEAT (a040.feat, which contains filtered_func_data.nii.gz) and MELODIC (a040.ica).
>
> The usage of fsl_regfilt is
>
> fsl_regfilt -i <input> -d <design> -f <component numbers or filter threshold> -o <out>
>
> So I execute:
>
> fsl_regfilt -i ./a040.feat/filtered_func_data.nii.gz -d ./a040.ica/melodic_mix \ -o denoise_ICAfiltered -f "1,2,4,7,13,14,16,17,25,28,29,30"
>
I think instead of "-o" the command sees " -o" which won't get interpreted as the option.
> But here comes the error message:
>
> ***************************************************
> The following COMPULSORY options have not been set:
> -o,--out output file name for the filtered data
> ***************************************************
>
> But I did set -o, didn't I?
>
> Can anyone help me to figure out why?
>
> Thanks in advance.
>
> Mark
>
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