Hi,
This script doesn't actually mention Verio, it mentions Varian, which is a type of scanner we used to have in our lab in Oxford. The Varian code is not useful to anyone outside Oxford and isn't even mentioned in the usage.
The script should be fine for all current Siemens scanners - as far as I know - but make sure you check the outputs to make sure.
All the best,
Mark
On 7 Aug 2012, at 14:14, Geranmayeh, Fatemeh wrote:
> Dear Mark
>
> Can you please confirm if this script is safe to use with Siemens Trio.
> The script text mentions Siemens Verion.
>
> Many thanks
>
> Fatemeh
>
>
>
> Dr Fatemeh Geranmayeh
> Wellcome Trust Clinical Research Fellow
> The Computational, Cognitive and Clinical Neuroimaging Laboratory
> Imperial College London
> Telephone : 020 7594 7994
>
>
>
>
>
> On 24/07/2012 18:04, "Mark Jenkinson" <[log in to unmask]> wrote:
>
>> Hi,
>>
>> This is going to be in our upcoming release, but in the meantime you can
>> find a copy of fsl_prepare_fieldmap at:
>> http://www.fmrib.ox.ac.uk/fsldownloads/patches/
>>
>> This just needs to be copied to $FSLDIR/bin/ on your machine.
>> Note that this is only designed to work with Siemens data at present.
>>
>> All the best,
>> Mark
>>
>>
>> On 24 Jul 2012, at 13:57, Fatemeh Geranmayeh wrote:
>>
>>> Dear Experts.
>>>
>>> I am following the instructions given at 2012 FSL course on how to
>>> process fieldmap phase difference images acquired by Siemens. ( Page 286
>>> of the handout). The command fsl_prepare_fieldmap does not work, and I
>>> can not get the usage command by just typing it either. I note someone
>>> else raised this issue back in May. I have tried both
>>> fsl_prepare_fieldmap, and prepare_fieldmap command. There are no manual
>>> /help entry for this.
>>>
>>>
>>> Can you help?
>>>
>>> Best wishes
>>> Fatemeh
>>>
>
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