Hi
You can combine fslroi with fslstats -w :
fslroi T1image T1cropped `fslstats VentriclesMask -w`
Saad.
On 25 Aug 2012, at 17:24, özgün özalay wrote:
> Dear FSL experts;
>
> I want to crop my CSF segmented T1 image using a mask to isolate lateral ventricles. fslroi command involves cropping structural images but arguments are x-y-z coordinates. How can i get this mask to extract lateral ventricles?
>
> All the best
>
> Ozgun
--
Saad Jbabdi
University of Oxford, FMRIB Centre
JR Hospital, Headington, OX3 9DU, UK
(+44)1865-222466 (fax 717)
www.fmrib.ox.ac.uk/~saad
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