Dear FSL users;
I want to make 3D-Vertex Analysis on Lateral Ventricles. The common way to do this is to use FIRST for segmentation but because FIRST doesn't segment ventricles i used a Harward-Oxford Atlas to make ventricle mask for each subject and use it as a mask in FAST output of CSF. Is there anyway can i use these NIFTI files without .bvars files in Vertex Analysis?
All the best
Ozgun
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