Hi Andreas,
Thanks-- this article covers exactly what 'm talking about, but how do you then add another parameter for the artifact co-regressor in the tensor fitting in FSL? I normally just extract the brains and then reconstruct diffusion tensors with DTIFIT, manually choosing the input files. To use a co-regressor like the one in the article, can I still use the DTIFIT menu or do I need to put a --cni in the command line? Sorry for the naive questions, I'm brand-new to Linux as well...
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