Dear FSLers,
I am trying to generate an overlay figure of two thresh_zstat images.
I used the script below with the overlay command, but I got two solid
colors (red and blue) without the color range corresponding to the
range of z-scores.
How would I preserve the 2 color ranges (1 color range for each
thresh_zstat image) for the overlayed figure?
Thanks.
Michelle
#!/bin/bash
T1=$FSLDIR/data/standard/MNI152lin_T1_2mm_brain
root=/usr/local/freesurfer/subjects/CORRECT_V_INCORRECT_SM08/zp05/
result=GLM_HC_FC_FCPS
overlay 1 0 $T1 -a
$root/happy_fearful_corr.gfeat/cope1.feat/thresh_zstat1.nii.gz 1.65 8
$root/happy_fearful_corr.gfeat/cope1.feat/thresh_zstat2.nii.gz 1.65 8 $result
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