Dear Stephen,
Thanks for the answer. I ran the analysis two times, so I ran it a third time and noticed the silly problem.
When I got the 4 - tbss_4_prestats, I ran it inside the /stats/ folder. FSL lets me do it but I noticed that it does not create the thresh.txt file. I did it because in the previous step it mentions that you should "cd stats" and never bothered to "cd .." back.
So it is important to run the tbss_4_prestats inside the "my TBSS" folder.
After that it worked perfectly.
Thanks again
Best regards
Eduardo
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