Hi - You can use "fslmaths -roi" to isolate a slice from the fdt_paths file, then feed the result to fslstats -V
Cheers
Saad
On 27 Jun 2012, at 09:31, Nick Fallon wrote:
> Thanks Saad,
>
> that is a big help. I can certainly have a try at these methods and see what comes up, I may struggle with is calculating the tract width, but I will certainly look into it, is their a way of exporting the number of voxels in a specific Z slice?
>
> Thanks again for your kind suggestions.
>
> Best,
>
> Nick
>
--
Saad Jbabdi
University of Oxford, FMRIB Centre
JR Hospital, Headington, OX3 9DU, UK
(+44)1865-222466 (fax 717)
www.fmrib.ox.ac.uk/~saad
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