Thanks Matthew
I am using FSL 4.1.9 on MacOS X.
Regards
Nawaf
On 25/06/12 11:19 PM, "Matthew Webster" <[log in to unmask]> wrote:
> Hello Nawaf,
> Thank you for the upload, I ran the same command
> locally and I did not see the error message you are getting - can you confirm
> which version of FSL you are using?
>
> Kind Regards
>
> Matthew
>
>> Hi Matthew
>>
>> Thanks for your response. The reference number is 329177.
>>
>> Regards
>> Nawaf
>>
>>
>> On 22/06/12 12:47 AM, "Matthew Webster" <[log in to unmask]> wrote:
>>
>>> Hello,
>>> Can you tar up your FEAT folder ( that has used non-linear
>>> registration ) and upload it to:
>>>
>>> http://www.fmrib.ox.ac.uk/cgi-bin/upload.cgi
>>>
>>> and let me know the 6-digit reference number?
>>>
>>> Kind Regards
>>>
>>> Matthew
>>>> Dear Mailing List
>>>>
>>>> I have been trying to use the Featquery gui to extract stats from specific
>>>> ROIs based on atlas labels on data which has been FNIRT'd. The error
>>>> message
>>>> below is the result. I have tried different masks (both manual and from
>>>> atlases) as well as simple coordinates, and the same error occurs. No
>>>> problem
>>>> occurs if "non-linear" is not ticked during the FEAT analysis but this is
>>>> required for my study. I note previous related posts but was not able to
>>>> find
>>>> the resolution.
>>>>
>>>> Kind Regards
>>>> NY (FSL 4.1.9)
>>>>
>>>> ========================================================
>>>>
>>>> /usr/local/fsl/bin/fslroi
>>>> /usr/local/fsl/data/atlases//Juelich/Juelich-prob-1mm /tmp/featquery_wbJ1K9
>>>> 46 1
>>>>
>>>> /usr/local/fsl/bin/featquery 1
>>>> /Users/nyassi/Desktop/fMRI_ASL_Test_Data/Run_3/Outputs/run3_motor_trydiffre
>>>> g.
>>>> feat 7 stats/pe1 stats/pe2 stats/cope1 stats/varcope1 stats/tstat1
>>>> stats/zstat1 thresh_zstat1 featquery -p -s -w -b /tmp/featquery_wbJ1K9
>>>> expected floating-point number but got "Mask"
>>>> while executing
>>>> "format %.4g [ lindex $thevals 0 ] "
>>>> ("for" body line 243)
>>>> invoked from within
>>>> "for { set f 1 } { $f <= $featquery(multiple) } { incr f 1 } {
>>>>
>>>> #{{{ setup output dir and logging etc.
>>>>
>>>> set mask $origmask
>>>>
>>>> cd [ lindex $argv $f ]
>>>> ..."
>>>> (file "/usr/local/fsl/bin/featquery" line 167)
>>>>
>>
|