Hello Nawaf,
Thank you for the upload, I ran the same command locally and I did not see the error message you are getting - can you confirm which version of FSL you are using?
Kind Regards
Matthew
> Hi Matthew
>
> Thanks for your response. The reference number is 329177.
>
> Regards
> Nawaf
>
>
> On 22/06/12 12:47 AM, "Matthew Webster" <[log in to unmask]> wrote:
>
>> Hello,
>> Can you tar up your FEAT folder ( that has used non-linear
>> registration ) and upload it to:
>>
>> http://www.fmrib.ox.ac.uk/cgi-bin/upload.cgi
>>
>> and let me know the 6-digit reference number?
>>
>> Kind Regards
>>
>> Matthew
>>> Dear Mailing List
>>>
>>> I have been trying to use the Featquery gui to extract stats from specific
>>> ROIs based on atlas labels on data which has been FNIRT'd. The error message
>>> below is the result. I have tried different masks (both manual and from
>>> atlases) as well as simple coordinates, and the same error occurs. No problem
>>> occurs if "non-linear" is not ticked during the FEAT analysis but this is
>>> required for my study. I note previous related posts but was not able to find
>>> the resolution.
>>>
>>> Kind Regards
>>> NY (FSL 4.1.9)
>>>
>>> ========================================================
>>>
>>> /usr/local/fsl/bin/fslroi
>>> /usr/local/fsl/data/atlases//Juelich/Juelich-prob-1mm /tmp/featquery_wbJ1K9
>>> 46 1
>>>
>>> /usr/local/fsl/bin/featquery 1
>>> /Users/nyassi/Desktop/fMRI_ASL_Test_Data/Run_3/Outputs/run3_motor_trydiffreg.
>>> feat 7 stats/pe1 stats/pe2 stats/cope1 stats/varcope1 stats/tstat1
>>> stats/zstat1 thresh_zstat1 featquery -p -s -w -b /tmp/featquery_wbJ1K9
>>> expected floating-point number but got "Mask"
>>> while executing
>>> "format %.4g [ lindex $thevals 0 ] "
>>> ("for" body line 243)
>>> invoked from within
>>> "for { set f 1 } { $f <= $featquery(multiple) } { incr f 1 } {
>>>
>>> #{{{ setup output dir and logging etc.
>>>
>>> set mask $origmask
>>>
>>> cd [ lindex $argv $f ]
>>> ..."
>>> (file "/usr/local/fsl/bin/featquery" line 167)
>>>
>
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