Hello Experts,
I am trying to skull strip my Field Map Magnitude image for improved registration of my functional MRI. I have tried many different settings (both from the command line and gui) and variations of BET, including eye clean up, etc, and have tried FAST as well, but these either output a near exact version of the input file or grossly take chunks out of the brain. I think this is due to the near isointensity of the image. Below is a screen clip of the image.
What do you suggest?
Thank you for your help!
Varina
https://skydrive.live.com/embed?cid=DC678833E6FA9962&resid=DC678833E6FA9962%21292&authkey=ADm9dmlsu_zTCME
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